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1

Frictional contact of laminated elastic half-spaces allowing interface cavities. Part 2: Numerical results

A. A. Kryshtafovych, S. J. Matysiak

Journal:

International Journal for Numerical and Analytical Methods in Geomechanics

Year:

2001

Language:

english

File:

PDF, 342 KB

english, 2001

2

Frictional contact of laminated elastic half-spaces allowing interface cavities. Part 1: Analytical treatment

A. A. Kryshtafovych, S. J. Matysiak

Journal:

International Journal for Numerical and Analytical Methods in Geomechanics

Year:

2001

Language:

english

File:

PDF, 207 KB

english, 2001

3

Critical assessment of methods of protein structure prediction (CASP) - round x

Moult, John, Fidelis, Krzysztof, Kryshtafovych, Andriy, Schwede, Torsten, Tramontano, Anna

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2014

Language:

english

File:

PDF, 103 KB

english, 2014

4

Critical assessment of methods of protein structure prediction—Round VIII

John Moult, Krzysztof Fidelis, Andriy Kryshtafovych, Burkhard Rost, Anna Tramontano

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2009

Language:

english

File:

PDF, 71 KB

english, 2009

5

Critical assessment of methods of protein structure prediction (CASP)—round IX

John Moult, Krzysztof Fidelis, Andriy Kryshtafovych, Anna Tramontano

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2011

Language:

english

File:

PDF, 75 KB

english, 2011

6

Critical assessment of methods of protein structure prediction (CASP) - progress and new directions in Round XI

Moult, John, Fidelis, Krzysztof, Kryshtafovych, Andriy, Schwede, Torsten, Tramontano, Anna

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2016

Language:

english

File:

PDF, 646 KB

english, 2016

7

Critical Assessment of Methods of Protein Structure Prediction (CASP) - Round XII

Moult, John, Fidelis, Krzysztof, Kryshtafovych, Andriy, Schwede, Torsten, Tramontano, Anna

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2017

Language:

english

File:

PDF, 1.49 MB

english, 2017

8

System for accepting server predictions in CASP6

Volker A. Eyrich, Andriy Kryshtafovych, Maciej Milostan, Krzysztof Fidelis

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2005

Language:

english

File:

PDF, 249 KB

english, 2005

9

CASP6 data processing and automatic evaluation at the protein structure prediction center

Andriy Kryshtafovych, Maciej Milostan, Lukasz Szajkowski, Pawel Daniluk, Krzysztof Fidelis

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2005

Language:

english

File:

PDF, 162 KB

english, 2005

10

Progress over the first decade of CASP experiments

Andriy Kryshtafovych, Česlovas Venclovas, Krzysztof Fidelis, John Moult

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2005

Language:

english

File:

PDF, 1.99 MB

english, 2005

11

Generalized modeling of enzyme–ligand interactions using proteochemometrics and local protein substructures

Helena Strömbergsson, Andriy Kryshtafovych, Peteris Prusis, Krzysztof Fidelis, Jarl E. S. Wikberg, Jan Komorowski, Torgeir R. Hvidsten

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2006

Language:

english

File:

PDF, 527 KB

english, 2006

12

New tools and expanded data analysis capabilities at the protein structure prediction center

Andriy Kryshtafovych, Andreas Prlic, Zinoviy Dmytriv, Pawel Daniluk, Maciej Milostan, Volker Eyrich, Tim Hubbard, Krzysztof Fidelis

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2007

Language:

english

File:

PDF, 804 KB

english, 2007

13

Assessment of predictions in the model quality assessment category

Domenico Cozzetto, Andriy Kryshtafovych, Michele Ceriani, Anna Tramontano

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2007

Language:

english

File:

PDF, 264 KB

english, 2007

14

Progress from CASP6 to CASP7

Andriy Kryshtafovych, Krzysztof Fidelis, John Moult

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2007

Language:

english

File:

PDF, 2.21 MB

english, 2007

15

Critical assessment of methods of protein structure prediction—Round VII

John Moult, Krzysztof Fidelis, Andriy Kryshtafovych, Burkhard Rost, Tim Hubbard, Anna Tramontano

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2007

Language:

english

File:

PDF, 114 KB

english, 2007

16

Local descriptors of protein structure: A systematic analysis of the sequence-structure relationship in proteins using short- and long-range interactions

Torgeir R. Hvidsten, Andriy Kryshtafovych, Krzysztof Fidelis

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2009

Language:

english

File:

PDF, 571 KB

english, 2009

17

Protein structure prediction center in CASP8

Andriy Kryshtafovych, Oleh Krysko, Pawel Daniluk, Zinovii Dmytriv, Krzysztof Fidelis

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2009

Language:

english

File:

PDF, 205 KB

english, 2009

18

CASP8 results in context of previous experiments

Andriy Kryshtafovych, Krzysztof Fidelis, John Moult

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2009

Language:

english

File:

PDF, 1.26 MB

english, 2009

19

Evaluation of CASP8 model quality predictions

Domenico Cozzetto, Andriy Kryshtafovych, Anna Tramontano

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2009

Language:

english

File:

PDF, 332 KB

english, 2009

20

Evaluation of template-based models in CASP8 with standard measures

Domenico Cozzetto, Andriy Kryshtafovych, Krzysztof Fidelis, John Moult, Burkhard Rost, Anna Tramontano

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2009

Language:

english

File:

PDF, 129 KB

english, 2009

21

Evaluation of disorder predictions in CASP9

Bohdan Monastyrskyy, Krzysztof Fidelis, John Moult, Anna Tramontano, Andriy Kryshtafovych

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2011

Language:

english

File:

PDF, 1.71 MB

english, 2011

22

Evaluation of residue–residue contact predictions in CASP9

Bohdan Monastyrskyy, Krzysztof Fidelis, Anna Tramontano, Andriy Kryshtafovych

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2011

Language:

english

File:

PDF, 546 KB

english, 2011

23

Evaluation of model quality predictions in CASP9

Andriy Kryshtafovych, Krzysztof Fidelis, Anna Tramontano

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2011

Language:

english

File:

PDF, 2.15 MB

english, 2011

24

CASP9 results compared to those of previous casp experiments

Andriy Kryshtafovych, Krzysztof Fidelis, John Moult

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2011

Language:

english

File:

PDF, 2.37 MB

english, 2011

25

Target highlights in CASP9: Experimental target structures for the critical assessment of techniques for protein structure prediction

Andriy Kryshtafovych, John Moult, Sergio G. Bartual, J. Fernando Bazan, Helen Berman, Darren E. Casteel, Evangelos Christodoulou, John K. Everett, Jens Hausmann, Tatjana Heidebrecht, Tanya Hills, Raym

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2011

Language:

english

File:

PDF, 2.92 MB

english, 2011

26

Conditions of heat contact of anisotropic bodies via a thin anisotropic layer

A. A. Kryshtafovych

Journal:

Materials Science (Springer)

Year:

1994

Language:

english

File:

PDF, 178 KB

english, 1994

27

Influence of surface defects of a rigid base on the strength of a pressed anisotropic body

A. A. Kryshtafovych

Journal:

Materials Science (Springer)

Year:

1998

Language:

english

File:

PDF, 268 KB

english, 1998

28

Discontinuous contact of an anisotropic half-plane and a rigid base with disturbed surface

R.M. Shvets, R.M. Martynyak, A.A. Kryshtafovych

Journal:

International Journal of Engineering Science

Year:

1996

Language:

english

File:

PDF, 829 KB

english, 1996

29

Strength of a system of mated anisotropic half-planes with surface recesses

A. Kryshtafovych, R. Martynyak

Journal:

International Journal of Engineering Science

Year:

2001

Language:

english

File:

PDF, 294 KB

english, 2001

30

Protein structure prediction and model quality assessment

Andriy Kryshtafovych, Krzysztof Fidelis

Journal:

Drug Discovery Today

Year:

2009

Language:

english

File:

PDF, 396 KB

english, 2009

31

Using local gene expression similarities to discover regulatory binding site modules

Bartek Wilczyński, Torgeir R Hvidsten, Andriy Kryshtafovych, Jerzy Tiuryn, Jan Komorowski, Krzysztof Fidelis

Journal:

BMC Bioinformatics

Year:

2006

Language:

english

File:

PDF, 687 KB

english, 2006

32

Assessment of protein disorder region predictions in CASP10

Monastyrskyy, Bohdan, Kryshtafovych, Andriy, Moult, John, Tramontano, Anna, Fidelis, Krzysztof

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2014

Language:

english

File:

PDF, 2.24 MB

english, 2014

33

CASP prediction center infrastructure and evaluation measures in CASP10 and CASP ROLL

Kryshtafovych, Andriy, Monastyrskyy, Bohdan, Fidelis, Krzysztof

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2014

Language:

english

File:

PDF, 825 KB

english, 2014

34

CASP10 results compared to those of previous CASP experiments

Kryshtafovych, Andriy, Fidelis, Krzysztof, Moult, John

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2014

Language:

english

File:

PDF, 818 KB

english, 2014

35

Challenging the state of the art in protein structure prediction: Highlights of experimental target structures for the 10th Critical Assessment of Techniques for Protein Structure Prediction Experiment CASP10

Kryshtafovych, Andriy, Moult, John, Bales, Patrick, Bazan, J. Fernando, Biasini, Marco, Burgin, Alex, Chen, Chen, Cochran, Frank V., Craig, Timothy K., Das, Rhiju, Fass, Deborah, Garcia-Doval, Carmela

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2014

Language:

english

File:

PDF, 1018 KB

english, 2014

36

[IEEE Comput. Soc 2003 IEEE Bioinformatics Conference. CSB2003 - Stanford, CA, USA (11-14 Aug. 2003)] Computational Systems Bioinformatics. CSB2003. Proceedings of the 2003 IEEE Bioinformatics Conference. CSB2003 - A rule-based framework for gene regulation pathways discovery

Wilczynski, B., Hvidsten, T., Kryshtafovych, A., Stubbs, L., Komorowski, J., Fidelis, K.

Year:

2003

File:

PDF, 287 KB

2003

37

Interaction Model Based on Local Protein Substructures Generalizes to the Entire Structural Enzyme-Ligand Space

Strömbergsson, Helena, Daniluk, Pawel, Kryshtafovych, Andriy, Fidelis, Krzysztof, Wikberg, Jarl E. S., Kleywegt, Gerard J., Hvidsten, Torgeir R.

Journal:

Journal of Chemical Information and Modeling

Year:

2008

Language:

english

File:

PDF, 2.90 MB

english, 2008

38

Assessment of the assessment: Evaluation of the model quality estimates in CASP10

Kryshtafovych, Andriy, Barbato, Alessandro, Fidelis, Krzysztof, Monastyrskyy, Bohdan, Schwede, Torsten, Tramontano, Anna

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2014

Language:

english

File:

PDF, 1.36 MB

english, 2014

39

Definition and classification of evaluation units for CASP10

Taylor, Todd J., Tai, Chin-Hsien, Huang, Yuanpeng J., Block, Jeremy, Bai, Hongjun, Kryshtafovych, Andriy, Montelione, Gaetano T., Lee, Byungkook

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2014

Language:

english

File:

PDF, 1.09 MB

english, 2014

40

Evaluation of residue-residue contact prediction in CASP10

Monastyrskyy, Bohdan, D'Andrea, Daniel, Fidelis, Krzysztof, Tramontano, Anna, Kryshtafovych, Andriy

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2014

Language:

english

File:

PDF, 1007 KB

english, 2014

41

Using multi-data hidden Markov models trained on local neighborhoods of protein structure to predict residue-residue contacts

Bjorkholm, P., Daniluk, P., Kryshtafovych, A., Fidelis, K., Andersson, R., Hvidsten, T. R.

Journal:

Year:

2009

Language:

english

File:

PDF, 651 KB

english, 2009

42

A novel approach to fold recognition using sequence-derived properties from sets of structurally similar local fragments of proteins

Hvidsten, T. R., Kryshtafovych, A., Komorowski, J., Fidelis, K.

Journal:

Year:

2004

File:

PDF, 11 KB

2004

43

A novel approach to fold recognition using sequence-derived properties from sets of structurally similar local fragments of proteins

Hvidsten, T. R., Kryshtafovych, A., Komorowski, J., Fidelis, K.

Journal:

Year:

2003

Language:

english

File:

PDF, 217 KB

english, 2003

44

[IEEE Comput. Soc 2003 IEEE Bioinformatics Conference. CSB2003 - Stanford, CA, USA (11-14 Aug. 2003)] Computational Systems Bioinformatics. CSB2003. Proceedings of the 2003 IEEE Bioinformatics Conference. CSB2003 - Fold recognition using sequence fingerprints of protein local substructures

Kryshtafovych, A., Hvidsten, T.R., Komorowski, J., Fidelis, K.

Year:

2003

Language:

english

File:

PDF, 217 KB

english, 2003

45

Some of the most interesting CASP11 targets through the eyes of their authors

Kryshtafovych, Andriy, Moult, John, Baslé, Arnaud, Burgin, Alex, Craig, Timothy K., Edwards, Robert A., Fass, Deborah, Hartmann, Marcus D., Korycinski, Mateusz, Lewis, Richard J., Lorimer, Donald, Lup

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2015

Language:

english

File:

PDF, 1.12 MB

english, 2015

46

New encouraging developments in contact prediction: Assessment of the CASP11 results

Monastyrskyy, Bohdan, D'Andrea, Daniel, Fidelis, Krzysztof, Tramontano, Anna, Kryshtafovych, Andriy

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2015

Language:

english

File:

PDF, 1.20 MB

english, 2015

47

Evaluation of free modeling targets in CASP11 and ROLL

Kinch, Lisa N., Li, Wenlin, Monastyrskyy, Bohdan, Kryshtafovych, Andriy, Grishin, Nick V.

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2015

Language:

english

File:

PDF, 1.05 MB

english, 2015

48

CASP11 statistics and the prediction center evaluation system

Kryshtafovych, Andriy, Monastyrskyy, Bohdan, Fidelis, Krzysztof

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2016

Language:

english

File:

PDF, 103 KB

english, 2016

49

CASP 11 Target Classification

Kinch, Lisa N., Li, Wenlin, Schaeffer, R. Dustin, Dunbrack, Roland L., Monastyrskyy, Bohdan, Kryshtafovych, Andriy, Grishin, Nick V.

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2016

Language:

english

File:

PDF, 998 KB

english, 2016

50

Prediction of homo- and hetero-protein complexes by protein docking and template-based modeling: a CASP-CAPRI experiment

Lensink, Marc F., Velankar, Sameer, Kryshtafovych, Andriy, Huang, Shen-You, Schneidman-Duhovny, Dina, Sali, Andrej, Segura, Joan, Fernandez-Fuentes, Narcis, Viswanath, Shruthi, Elber, Ron, Grudinin, S

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2016

Language:

english

File:

PDF, 1.18 MB

english, 2016

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